Molecular Biology Notebook - On-line courses for the teaching of molecular biology.

Biochemistry, Thermodynamics, and Structure of Nucleic Acids - Computational tools from John SantaLucia's Lab. - Wayne State Univ.

Oligo Software - Oligo is a Molecular Biology Insights product. It has been created for difficult sequencing and oligo projects. First on the market (1989).

Redasoft - Makers of software with a restriction enzyme database to design experiments and produce high quality graphics.

Array Designer DNA Microarray Software - DNA microarray design and analysis software for SNP scoring and cDNA probes. WIN downloadable demos and online ordering are available.

Southwest Parallel Software - High performance versions of Phil Green's Phrap, Swat and Cross-Match sequence analysis tools. [UNIX, download trial versions]

Forager - PC software that calculates equilibria of molecules that physically interact with each other.

Molecular Programming LLC - Sequence Quickie-Calc, an easy to use, calculator like program for DNA and protein analysis.

Molecular Toolbox - Links to programs and databases for online analysis of DNA, RNA and protein sequences.

PCR primer / oligo design software - Primer Premier - PCR primer design software and oligo tm calculator for real time, nested, cross species, and gmo oligo primer design.

Sequence Alignment and Modeling System - Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online.

Free Software for Molecular Biology - Gopher site listing over 150 free software programs in molecular biology and related areas - from Indiana Univ. Program files found at: gopher://iubio.bio.indiana.edu:70/11/IUBio-Software+Data/molbio.

NIH Center for Molecular Modeling - Search engine for visualizing 3-D biomolecular models.

Delta2D - Difference Analysis of 2D Gels - Compare 2D gel electrophoresis images from different experiments or samples. Produce dual channel images that show clearly the differences and similarities between two gels.

SimVector - Plasmid Map Vector Drawing Software - Vector map drawing software for simulating DNA cloning plasmid vector experiments allowing for publication of quality graphics.

The Vienna RNA Package - A free suit of software for the analysis of RNA secondary structure, including structure prediction and comparison as well as sequence design.

Scanalytics Gel Analysis Software - Scanalytics makes gel analysis software for Windows and Macintosh.

Linux for Biotechnology - A collection of biotechnology related software for Linux.

SigmaScan Pro-Powerful Image Analysis for Your PC - SigmaScan Pro 5.0 provides a complete image analysis package for studying the structure and size of objects in your visual information.

Beacon Designer - Molecular Beacon Taqman Design Software - Designs multiplex molecular beacons and Taqman probes with optimal Tm and secondary strutures.

Clufavor - Program for cluster and factor analysis of cDNA and oligonucleotide microarray data.

BioKin - Produces software for data analysis in enzyme kinetics, receptor binding, and viral dynamics. Also provide consulting services and custom-software development for high-throughput screening in drug discovery.