Bioperl.org - The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
BioJava.org - The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
BioXML.org - Resource to gather XML documentation, DTDs and tools for biology in one central location.
BioPython.org - The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
AceDB - A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
BioLisp.org - BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
Bielefeld University Bioinformatics Server - BiBiServ supports Internet-based collaborative research, software development and distance education in bioinformatics.
The Sanger Centre : Informatics Software: Dynamite - Code generator for writing dynamic programming programs.
AcePerl - OO Interface to AceDB
Boulder.pm - Simple but powerful data exchange language, suitable for serializing biological data objects.